Prototype 01
In use 100% mappedResearch Agent Suite
A multi-server system using agent cores, note structuring, and citation logging. Handles document generation, entity discovery, and outreach strategy through specialized sub-agents with API-based scheduling.
Core Implementation
4 MCP servers · 24 tools · research-agent-mcps monorepo
research-agent-mcp
6 toolsMulti-source research pipeline: clarify, search, evaluate, extract, synthesize, report
research-notes-mcp
5 toolsNote structuring: parse, cluster themes, find contradictions, extract questions, generate output
research-log-mcp
7 toolsCitation logging: create entries, track searches, evaluate sources, format references (APA/MLA/Chicago/IEEE)
evaluation-mcp (Evalla)
6 toolsQuality scoring: custom rubrics, batch scoring, rankings, verdicts with reasoning
Supporting Systems
8 additional projects composing the full research infrastructure
intelligence-engine
Entity Discovery
AST parsing across 8 languages, KuzuDB knowledge graphs, hybrid search (BM25 + semantic + graph expansion). 53,000+ entities indexed across 272 projects.
SPINE
Orchestration Framework
7 pluggable executors (SubagentExecutor, MCPOrchestratorExecutor, ContentPipelineExecutor, SmallLLMExecutor, TaskTypeRouter). Context stacks, OODA loops, 8-tier memory architecture.
gen-loop-mcp
Async Scheduling
Task scheduling with retry backoff, expiry, and 12+ notification channels (Slack, Telegram, Discord, email, Teams, Google Chat, ntfy, Pushover, Matrix).
agent-comm-mcp
Agent Coordination
Inter-agent messaging with registry, cross-device relay (HMAC-signed), conversation threading, circuit breaker, and idempotency.
showcase-mcp
Document Generation
Extract highlights from source code, generate showcase sites, security scanning before publish.
manual-mcp
Documentation
Auto-generate multi-part project manuals from source code analysis with pluggable analyzers.
session-handover-mcp
Session Continuity
Git history capture, modified file tracking, multi-project workspace handovers with Minna Memory integration.
minna-memory
Persistent Memory
SQLite entity memory with relationships, full-text search, confidence decay, cross-session context, and conflict detection.
Architecture
Capability Coverage
| Claim | Implementation | Status |
|---|---|---|
| Multi-server system | 4 research MCP servers (24 tools) | Production |
| Agent cores | SPINE executors (7 types) + autoresearch-ext | Production |
| Note structuring | research-notes-mcp (5 tools: parse, cluster, contradictions, questions, output) | Production |
| Citation logging | research-log-mcp (7 tools, 4 citation formats) | Production |
| Document generation | showcase-mcp + manual-mcp | Production |
| Entity discovery | intelligence-engine (15 MCP tools, 272 indexed projects) | Production |
| Outreach strategy | agent-comm-mcp (18 tools, cross-device relay) | Production |
| Orchestration framework | SPINE (7 pluggable executors, context stacks, tiered memory) | Production |
| API scheduling | gen-loop-mcp (9 tools, multi-channel notifications) | Production |
Every claim in the prototype description maps to a production implementation. 12 projects compose the full system.
Project Deep Dives
Explore individual components in detail